#!/bin/bash
set -e

pkg="prodigal"

if [ "$AUTOPKGTEST_TMP" = "" ] ; then
    AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
    trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM
fi

cd $AUTOPKGTEST_TMP

cp -a /usr/share/doc/${pkg}/test-data/ .
gunzip -r *

/usr/bin/prodigal -i test-data/genome.fna -o gene.coord.gbk -a protein.translations.faa -t testgenome.trn
